PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DL_D97D4666A.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NF-YC
Protein Properties Length: 246aa    MW: 27135.8 Da    PI: 6.5134
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DL_D97D4666A.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC144.81.9e-45721742101
                  NF-YC   2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrt 86 
                            l++fw++q   ie+atd+k+h + l ri+ki+kade v+misaeaPv++skace++ le+t+r+w+ ++enkr+tlkksd+aaav+rt
  Traes_7DL_D97D4666A.1  72 LQQFWAQQrseIEQATDIKKHPVQLKRIRKIMKADEGVHMISAEAPVVFSKACEMLTLEMTMRAWMVTKENKRQTLKKSDVAAAVART 159
                            89*****99999**************************************************************************** PP

                  NF-YC  87 difdflvdivprdel 101
                            d++dfl di+p de+
  Traes_7DL_D97D4666A.1 160 DVYDFLADIIPLDEM 174
                            ***********9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471138.05E-2535165IPR009072Histone-fold
PfamPF001254.5E-1542156IPR007125Histone H2A/H2B/H3
Gene3DG3DSA:1.10.150.604.4E-455105IPR001606ARID DNA-binding domain
Gene3DG3DSA:1.10.20.104.5E-29106170IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MGDVAGGSHV YPASAYPPGA TVATAPGITP AGSQPTPPFP ANPAQLSAQN QLMYEQSQQY  60
QQQLQQLHQR RLQQFWAQQR SEIEQATDIK KHPVQLKRIR KIMKADEGVH MISAEAPVVF  120
SKACEMLTLE MTMRAWMVTK ENKRQTLKKS DVAAAVARTD VYDFLADIIP LDEMKEEGVG  180
LHRAGPPPPP LGAPAGAYPY YYPPQLQVPG AAMVHGGQQV PQGHLPHVWI DLQEQQEKED  240
QQSESG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g92_C3e-29611708118HapE
4g91_C3e-29611708118HapE
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644345.11e-91PREDICTED: nuclear transcription factor Y subunit C-2
SwissprotQ8LCG74e-55NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBLW5I3P50.0W5I3P5_WHEAT; Uncharacterized protein
STRINGORGLA06G0202500.18e-93(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27033790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.21e-50nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]